IL_6D90_294

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCGG*CGGCGC

Length

11 nucleotides

Bulged bases

6D90|1|5|G|182

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|G|179
6D90|1|5|C|180
6D90|1|5|C|181
6D90|1|5|G|182
6D90|1|5|G|189
*
6D90|1|5|C|252
6D90|1|5|G|253
6D90|1|5|G|254
6D90|1|5|C|255
6D90|1|5|G|256
6D90|1|5|C|257

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain L

eL13

Chain h

eL35

Chain j

eL37