IL_6D90_300

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGGCGG*CGCCCCG

Length

14 nucleotides

Bulged bases

6D90|1|5|C|738|||A, 6D90|1|5|C|924, 6D90|1|5|C|925

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|C|737
6D90|1|5|C|738|||A
6D90|1|5|G|739
6D90|1|5|G|740
6D90|1|5|C|741
6D90|1|5|G|742
6D90|1|5|G|743
*
6D90|1|5|C|921
6D90|1|5|G|922|||A
6D90|1|5|C|922|||B
6D90|1|5|C|923
6D90|1|5|C|924
6D90|1|5|C|925
6D90|1|5|G|926

Current chains

Chain 5

28S rRNA

Nearby chains

Chain M

eL14

Chain S

eL20