IL_6D90_307

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCGAG*CGAGGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_307 not in the Motif Atlas

Geometric match to IL_4N0T_001

Geometric discrepancy: 0.3776

The information below is about IL_4N0T_001

Detailed Annotation

Double sheared; A in syn; two near cWW pairs

Broad Annotation

Double sheared; A in syn; two near cWW pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6D90|1|5|C|1429
6D90|1|5|C|1430
6D90|1|5|C|1431
6D90|1|5|G|1432
6D90|1|5|A|1433
6D90|1|5|G|1434
*
6D90|1|5|C|1450
6D90|1|5|G|1451
6D90|1|5|A|1452
6D90|1|5|G|1453
6D90|1|5|G|1454
6D90|1|5|G|1455

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

rL18