IL_6D90_309
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCGAAG*UGGAGGU
- Length
- 13 nucleotides
- Bulged bases
- 6D90|1|5|G|1577
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D90_309 not in the Motif Atlas
- Geometric match to IL_4V88_462
- Geometric discrepancy: 0.3002
- The information below is about IL_4V88_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6D90|1|5|G|1550
6D90|1|5|C|1551
6D90|1|5|G|1552
6D90|1|5|A|1553
6D90|1|5|A|1554
6D90|1|5|G|1555
*
6D90|1|5|U|1572
6D90|1|5|G|1573
6D90|1|5|G|1574
6D90|1|5|A|1575
6D90|1|5|G|1576
6D90|1|5|G|1577
6D90|1|5|U|1578
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain R
- eL19
- Chain p
- eL43
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