IL_6D90_312
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUG*CCC
- Length
- 7 nucleotides
- Bulged bases
- 6D90|1|5|U|1947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D90_312 not in the Motif Atlas
- Geometric match to IL_1U6B_001
- Geometric discrepancy: 0.2212
- The information below is about IL_1U6B_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_42997.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 23
Unit IDs
6D90|1|5|G|1945
6D90|1|5|G|1946
6D90|1|5|U|1947
6D90|1|5|G|1948
*
6D90|1|5|C|2035
6D90|1|5|C|2036
6D90|1|5|C|2037
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain H
- uL6
- Chain I
- uL16
- Chain S
- eL20
- Chain m
- eL40
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