IL_6D90_320

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCAAAGU*AAUGAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|G|3714
6D90|1|5|U|3715
6D90|1|5|C|3716
6D90|1|5|A|3717
6D90|1|5|A|3718
6D90|1|5|A|3719
6D90|1|5|G|3720
6D90|1|5|U|3721
*
6D90|1|5|A|3732
6D90|1|5|A|3733
6D90|1|5|U|3734
6D90|1|5|G|3735
6D90|1|5|A|3736
6D90|1|5|A|3737
6D90|1|5|G|3738
6D90|1|5|C|3739

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 4

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain i

eL36

Chain o

eL42