IL_6D90_338

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

6D90|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|A|599
6D90|1|2|G|600
6D90|1|2|G|601
6D90|1|2|G|602
6D90|1|2|C|603
6D90|1|2|A|604
6D90|1|2|A|605
6D90|1|2|G|606
6D90|1|2|U|607
6D90|1|2|C|608
*
6D90|1|2|G|635
6D90|1|2|C|636
6D90|1|2|U|637

Current chains

Chain 2

18S rRNA

Nearby chains

Chain DD

uS5

Chain EE

uS3

Chain KK

uS4

Chain ff

eS30