IL_6D90_340

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGAAAAAAUU*ACCGCAGCUA

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|U|805
6D90|1|2|U|806
6D90|1|2|G|807
6D90|1|2|A|808
6D90|1|2|A|809
6D90|1|2|A|810
6D90|1|2|A|811
6D90|1|2|A|812
6D90|1|2|A|813
6D90|1|2|U|814
6D90|1|2|U|815
*
6D90|1|2|A|849
6D90|1|2|C|850
6D90|1|2|C|851
6D90|1|2|G|852
6D90|1|2|C|853
6D90|1|2|A|854
6D90|1|2|G|855
6D90|1|2|C|856
6D90|1|2|U|857
6D90|1|2|A|858

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain II

eS7

Chain KK

uS4

Chain MM

uS17

Chain XX

uS8