IL_6D9J_017

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGUG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|C|223
6D9J|1|2|A|224
6D9J|1|2|G|225
6D9J|1|2|U|287
6D9J|1|2|G|288
*
6D9J|1|2|C|295
6D9J|1|2|U|296
6D9J|1|2|A|297
6D9J|1|2|G|298

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain HH

eS6

Chain JJ

eS8

Chain MM

uS17