3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUUCGA*UG
Length
8 nucleotides
Bulged bases
6D9J|1|2|U|368, 6D9J|1|2|C|369
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_021 not in the Motif Atlas
Geometric match to IL_5Y58_001
Geometric discrepancy: 0.3191
The information below is about IL_5Y58_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_59877.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

6D9J|1|2|U|366
6D9J|1|2|U|367
6D9J|1|2|U|368
6D9J|1|2|C|369
6D9J|1|2|G|370
6D9J|1|2|A|371
*
6D9J|1|2|U|393
6D9J|1|2|G|394

Current chains

Chain 2
18S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain JJ
eS8
Chain MM
uS17
Chain R
eL19

Coloring options:


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