IL_6D9J_021
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 6D9J|1|2|U|368, 6D9J|1|2|C|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_021 not in the Motif Atlas
- Geometric match to IL_5Y58_001
- Geometric discrepancy: 0.3191
- The information below is about IL_5Y58_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59877.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6D9J|1|2|U|366
6D9J|1|2|U|367
6D9J|1|2|U|368
6D9J|1|2|C|369
6D9J|1|2|G|370
6D9J|1|2|A|371
*
6D9J|1|2|U|393
6D9J|1|2|G|394
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain JJ
- eS8
- Chain MM
- uS17
- Chain R
- eL19
Coloring options: