IL_6D9J_021

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6D9J|1|2|U|368, 6D9J|1|2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_021 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.3191

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6D9J|1|2|U|366
6D9J|1|2|U|367
6D9J|1|2|U|368
6D9J|1|2|C|369
6D9J|1|2|G|370
6D9J|1|2|A|371
*
6D9J|1|2|U|393
6D9J|1|2|G|394

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain JJ

eS8

Chain MM

uS17

Chain R

eL19