IL_6D9J_031

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

6D9J|1|2|U|607

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_031 not in the Motif Atlas

Geometric match to IL_4ZC7_004

Geometric discrepancy: 0.2555

The information below is about IL_4ZC7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6D9J|1|2|A|599
6D9J|1|2|G|600
6D9J|1|2|G|601
6D9J|1|2|G|602
6D9J|1|2|C|603
6D9J|1|2|A|604
6D9J|1|2|A|605
6D9J|1|2|G|606
6D9J|1|2|U|607
6D9J|1|2|C|608
*
6D9J|1|2|G|635
6D9J|1|2|C|636
6D9J|1|2|U|637

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain ff

eS30