3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AGGUUC*GUU
Length
9 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_050 not in the Motif Atlas
Geometric match to IL_4V88_435
Geometric discrepancy: 0.2022
The information below is about IL_4V88_435
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_22046.1
Basepair signature
cWW-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

6D9J|1|2|A|1042
6D9J|1|2|G|1043
6D9J|1|2|G|1044
6D9J|1|2|U|1045
6D9J|1|2|U|1046
6D9J|1|2|C|1047
*
6D9J|1|2|G|1071
6D9J|1|2|U|1072
6D9J|1|2|U|1073

Current chains

Chain 2
18S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain A
uL2
Chain PP
uS11
Chain bb
eS26

Coloring options:


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