IL_6D9J_058

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_058 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.2021

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6D9J|1|2|G|1235
6D9J|1|2|G|1236
*
6D9J|1|2|C|1521
6D9J|1|2|A|1522
6D9J|1|2|C|1523

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain 4

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain QQ

uS19

Chain TT

uS13