IL_6D9J_070

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAA*UUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_070 not in the Motif Atlas

Geometric match to IL_3NDB_001

Geometric discrepancy: 0.3801

The information below is about IL_3NDB_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6D9J|1|2|C|1399
6D9J|1|2|U|1400
6D9J|1|2|A|1401
6D9J|1|2|A|1402
*
6D9J|1|2|U|1444
6D9J|1|2|U|1445
6D9J|1|2|A|1446
6D9J|1|2|G|1447

Current chains

Chain 2

18S rRNA

Nearby chains

Chain RR

uS9

Chain VV

uS10

Chain hh

RACK1