IL_6D9J_073

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_073 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.1492

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6D9J|1|2|A|1537
6D9J|1|2|C|1538
6D9J|1|2|U|1539
*
6D9J|1|2|A|1594
6D9J|1|2|U|1595
6D9J|1|2|U|1596

Current chains

Chain 2

18S rRNA

Nearby chains

Chain GG

uS7

Chain RR

uS9

Chain TT

uS13

Chain UU

eS19

Chain aa

eS25