IL_6D9J_077

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_077 not in the Motif Atlas

Geometric match to IL_4LFB_010

Geometric discrepancy: 0.1443

The information below is about IL_4LFB_010

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6D9J|1|2|G|1706
6D9J|1|2|U|1707
6D9J|1|2|C|1708
*
6D9J|1|2|G|1826
6D9J|1|2|U|1827
6D9J|1|2|C|1828

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain 9

eEF2

Chain n

eL41