IL_6D9J_094

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_094 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.2081

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6D9J|1|5|G|16
6D9J|1|5|A|17
6D9J|1|5|C|18
*
6D9J|1|8|G|139
6D9J|1|8|C|140
6D9J|1|8|C|141

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain N

eL15

Chain X

eL23

Chain h

eL35