IL_6D9J_100
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCCC*GCGGG
- Length
- 9 nucleotides
- Bulged bases
- 6D9J|1|5|C|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_100 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.2555
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
6D9J|1|5|C|123
6D9J|1|5|C|124
6D9J|1|5|C|125
6D9J|1|5|C|126
*
6D9J|1|5|G|142
6D9J|1|5|C|143
6D9J|1|5|G|144
6D9J|1|5|G|145
6D9J|1|5|G|146
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- eL8
- Chain N
- eL15
- Chain X
- eL23
- Chain h
- eL35
Coloring options: