IL_6D9J_114

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAG*CACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_114 not in the Motif Atlas

Geometric match to IL_3CUL_002

Geometric discrepancy: 0.3023

The information below is about IL_3CUL_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6D9J|1|5|G|461
6D9J|1|5|G|462
6D9J|1|5|A|463
6D9J|1|5|G|464
*
6D9J|1|5|C|691
6D9J|1|5|A|692
6D9J|1|5|C|693
6D9J|1|5|C|694

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain r

eL28