IL_6D9J_115

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

6D9J|1|5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|A|466
6D9J|1|5|U|467
6D9J|1|5|U|468
6D9J|1|5|C|469
6D9J|1|5|A|470
6D9J|1|5|A|471
6D9J|1|5|C|472
*
6D9J|1|5|G|682
6D9J|1|5|C|683
6D9J|1|5|G|684
6D9J|1|5|C|685
6D9J|1|5|A|686
6D9J|1|5|U|687
6D9J|1|5|U|688
6D9J|1|5|U|689

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain r

eL28