IL_6D9J_126

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*CCCG

Length

7 nucleotides

Bulged bases

6D9J|1|5|C|738|||A, 6D9J|1|5|C|924, 6D9J|1|5|C|925

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_126 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.3322

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6D9J|1|5|C|737
6D9J|1|5|C|738|||A
6D9J|1|5|G|739
*
6D9J|1|5|C|923
6D9J|1|5|C|924
6D9J|1|5|C|925
6D9J|1|5|G|926

Current chains

Chain 5

28S rRNA

Nearby chains

Chain M

eL14