IL_6D9J_135
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGACU*AGUGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_135 not in the Motif Atlas
- Geometric match to IL_9JA9_001
- Geometric discrepancy: 0.3685
- The information below is about IL_9JA9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.6
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6D9J|1|5|G|1173
6D9J|1|5|G|1174
6D9J|1|5|A|1175
6D9J|1|5|C|1176
6D9J|1|5|U|1177
*
6D9J|1|5|A|1184
6D9J|1|5|G|1185
6D9J|1|5|U|1186
6D9J|1|5|G|1187
6D9J|1|5|C|1188
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- uL18
Coloring options: