IL_6D9J_139

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_139 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.306

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6D9J|1|5|C|1431
6D9J|1|5|G|1432
6D9J|1|5|A|1433
6D9J|1|5|G|1434
*
6D9J|1|5|C|1450
6D9J|1|5|G|1451
6D9J|1|5|A|1452
6D9J|1|5|G|1453

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain Q

eL18