IL_6D9J_145

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_145 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.2859

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6D9J|1|5|C|1551
6D9J|1|5|G|1552
6D9J|1|5|A|1553
6D9J|1|5|A|1554
6D9J|1|5|G|1555
*
6D9J|1|5|U|1572
6D9J|1|5|G|1573
6D9J|1|5|G|1574
6D9J|1|5|A|1575
6D9J|1|5|G|1576

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain R

eL19

Chain p

eL43