IL_6D9J_148

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGG*CUAAUC

Length

10 nucleotides

Bulged bases

6D9J|1|5|G|1625, 6D9J|1|5|A|1637, 6D9J|1|5|A|1638

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|G|1624
6D9J|1|5|G|1625
6D9J|1|5|G|1626
6D9J|1|5|G|1627
*
6D9J|1|5|C|1635
6D9J|1|5|U|1636
6D9J|1|5|A|1637
6D9J|1|5|A|1638
6D9J|1|5|U|1639
6D9J|1|5|C|1640

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain N

eL15

Chain P

uL22

Chain j

eL37