IL_6D9J_149
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUG*CUAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_149 not in the Motif Atlas
- Geometric match to IL_5ML7_010
- Geometric discrepancy: 0.3578
- The information below is about IL_5ML7_010
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_68118.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 27
Unit IDs
6D9J|1|5|C|1686
6D9J|1|5|U|1687
6D9J|1|5|G|1688
*
6D9J|1|5|C|1848
6D9J|1|5|U|1849
6D9J|1|5|A|1850
6D9J|1|5|G|1851
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain Q
- eL18
- Chain a
- uL15
- Chain b
- eL29
Coloring options: