IL_6D9J_170

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6D9J|1|5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_170 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2337

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6D9J|1|5|G|2001
6D9J|1|5|A|2002
6D9J|1|5|G|2003
6D9J|1|5|U|2004
6D9J|1|5|G|2005
*
6D9J|1|5|C|2014
6D9J|1|5|U|2015
6D9J|1|5|C|2016

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

uL10

Chain t

uL11