3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUG*CG
Length
5 nucleotides
Bulged bases
6D9J|1|5|U|2084
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_171 not in the Motif Atlas
Geometric match to IL_4LFB_046
Geometric discrepancy: 0.2359
The information below is about IL_4LFB_046
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

6D9J|1|5|C|2083
6D9J|1|5|U|2084
6D9J|1|5|G|2085
*
6D9J|1|5|C|2272
6D9J|1|5|G|2273

Current chains

Chain 5
28S rRNA

Nearby chains

Chain C
uL4
Chain F
uL30
Chain Q
eL18
Chain e
eL32

Coloring options:


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