IL_6D9J_171

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

6D9J|1|5|U|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_171 not in the Motif Atlas

Geometric match to IL_4LFB_046

Geometric discrepancy: 0.2359

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6D9J|1|5|C|2083
6D9J|1|5|U|2084
6D9J|1|5|G|2085
*
6D9J|1|5|C|2272
6D9J|1|5|G|2273

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain F

uL30

Chain Q

eL18

Chain e

eL32