IL_6D9J_173

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

6D9J|1|5|A|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_173 not in the Motif Atlas

Geometric match to IL_3OXE_001

Geometric discrepancy: 0.3527

The information below is about IL_3OXE_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6D9J|1|5|G|2299
6D9J|1|5|A|2300
6D9J|1|5|G|2301
*
6D9J|1|5|C|2334
6D9J|1|5|C|2335

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

uL4

Chain e

eL32

Chain r

eL28