3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GG*CUC
Length
5 nucleotides
Bulged bases
6D9J|1|5|U|2769
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_181 not in the Motif Atlas
Geometric match to IL_5TBW_131
Geometric discrepancy: 0.3068
The information below is about IL_5TBW_131
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

6D9J|1|5|G|2549
6D9J|1|5|G|2550
*
6D9J|1|5|C|2768
6D9J|1|5|U|2769
6D9J|1|5|C|2770

Current chains

Chain 5
28S rRNA

Nearby chains

Chain g
eL34

Coloring options:


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