IL_6D9J_197

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

6D9J|1|5|C|3701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_197 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.3288

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6D9J|1|5|C|3700
6D9J|1|5|C|3701
6D9J|1|5|A|3702
6D9J|1|5|G|3703
*
6D9J|1|5|C|3749
6D9J|1|5|G|3750

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

uL2