IL_6D9J_201

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCAAAGU*AAUGAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|G|3714
6D9J|1|5|U|3715
6D9J|1|5|C|3716
6D9J|1|5|A|3717
6D9J|1|5|A|3718
6D9J|1|5|A|3719
6D9J|1|5|G|3720
6D9J|1|5|U|3721
*
6D9J|1|5|A|3732
6D9J|1|5|A|3733
6D9J|1|5|U|3734
6D9J|1|5|G|3735
6D9J|1|5|A|3736
6D9J|1|5|A|3737
6D9J|1|5|G|3738
6D9J|1|5|C|3739

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain i

eL36

Chain o

eL42