IL_6D9J_213

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUGAGGC*GCUCC

Length

13 nucleotides

Bulged bases

6D9J|1|5|G|4084, 6D9J|1|5|G|4086, 6D9J|1|5|G|4087, 6D9J|1|5|C|4162, 6D9J|1|5|U|4163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|G|4081
6D9J|1|5|G|4082
6D9J|1|5|U|4083
6D9J|1|5|G|4084
6D9J|1|5|A|4085
6D9J|1|5|G|4086
6D9J|1|5|G|4087
6D9J|1|5|C|4088
*
6D9J|1|5|G|4161
6D9J|1|5|C|4162
6D9J|1|5|U|4163
6D9J|1|5|C|4164
6D9J|1|5|C|4165

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain A

uL2

Chain G

eL8

Chain X

eL23