IL_6D9J_229

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_229 not in the Motif Atlas

Homologous match to IL_8C3A_118

Geometric discrepancy: 0.1688

The information below is about IL_8C3A_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6D9J|1|5|C|4466
6D9J|1|5|A|4467
6D9J|1|5|U|4468
*
6D9J|1|5|G|4489
6D9J|1|5|C|4490
6D9J|1|5|G|4491

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

uL14