IL_6D9J_236

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_236 not in the Motif Atlas

Homologous match to IL_8C3A_124

Geometric discrepancy: 0.2593

The information below is about IL_8C3A_124

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6D9J|1|5|A|4590
6D9J|1|5|U|4591
6D9J|1|5|C|4592
*
6D9J|1|5|G|4618
6D9J|1|5|U|4619
6D9J|1|5|U|4620

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

uL14