3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCUCGGAUAGC*GUGCGGAGAG
Length
21 nucleotides
Bulged bases
6D9J|1|5|A|4764, 6D9J|1|5|G|4870, 6D9J|1|5|C|4871, 6D9J|1|5|G|4873, 6D9J|1|5|A|4876
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_245 not in the Motif Atlas
Homologous match to IL_8P9A_352
Geometric discrepancy: 0.5461
The information below is about IL_8P9A_352
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28855.1
Basepair signature
cWW-L-R-L-cWW-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6D9J|1|5|C|4756
6D9J|1|5|C|4757
6D9J|1|5|U|4758
6D9J|1|5|C|4759
6D9J|1|5|G|4760
6D9J|1|5|G|4761
6D9J|1|5|A|4762
6D9J|1|5|U|4763
6D9J|1|5|A|4764
6D9J|1|5|G|4765
6D9J|1|5|C|4766
*
6D9J|1|5|G|4868
6D9J|1|5|U|4869
6D9J|1|5|G|4870
6D9J|1|5|C|4871
6D9J|1|5|G|4872
6D9J|1|5|G|4873
6D9J|1|5|A|4874
6D9J|1|5|G|4875
6D9J|1|5|A|4876
6D9J|1|5|G|4877

Current chains

Chain 5
28S rRNA

Nearby chains

Chain E
eL6
Chain H
uL6
Chain M
eL14
Chain O
uL13
Chain S
eL20

Coloring options:


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