3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UCCC*GUCA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_247 not in the Motif Atlas
Geometric match to IL_4WF9_109
Geometric discrepancy: 0.2851
The information below is about IL_4WF9_109
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_30621.4
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
66

Unit IDs

6D9J|1|5|U|4885
6D9J|1|5|C|4886
6D9J|1|5|C|4887
6D9J|1|5|C|4888
*
6D9J|1|5|G|4931
6D9J|1|5|U|4932
6D9J|1|5|C|4933
6D9J|1|5|A|4934

Current chains

Chain 5
28S rRNA

Nearby chains

Chain E
eL6

Coloring options:


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