IL_6D9J_251
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGGG*CACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_251 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.2266
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
6D9J|1|5|U|4991
6D9J|1|5|G|4992
6D9J|1|5|G|4993
6D9J|1|5|G|4994
*
6D9J|1|5|C|5057
6D9J|1|5|A|5058
6D9J|1|5|C|5059
6D9J|1|5|A|5060
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain d
- eL31
Coloring options: