IL_6D9J_256

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_256 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.3207

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6D9J|1|5|A|5014
6D9J|1|5|G|5015
6D9J|1|5|A|5016
6D9J|1|5|G|5017
*
6D9J|1|5|C|5032
6D9J|1|5|G|5033
6D9J|1|5|A|5034
6D9J|1|5|U|5035

Current chains

Chain 5

28S rRNA

Nearby chains

Chain JJ

eS8

Chain R

eL19