IL_6D9J_266

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGACCCC*GGGGGAUG

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|C|188
6D9J|1|2|U|189
6D9J|1|2|G|190
6D9J|1|2|A|191
6D9J|1|2|C|192
6D9J|1|2|C|193
6D9J|1|2|C|194
6D9J|1|2|C|195
*
6D9J|1|2|G|204
6D9J|1|2|G|205
6D9J|1|2|G|206
6D9J|1|2|G|207
6D9J|1|2|G|208
6D9J|1|2|A|209
6D9J|1|2|U|210
6D9J|1|2|G|211

Current chains

Chain 2

18S rRNA

Nearby chains

Chain JJ

eS8