IL_6D9J_269

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUCCA*UUAACGAGGAUC

Length

19 nucleotides

Bulged bases

6D9J|1|2|G|588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|G|563
6D9J|1|2|A|564
6D9J|1|2|G|565
6D9J|1|2|U|566
6D9J|1|2|C|567
6D9J|1|2|C|568
6D9J|1|2|A|569
*
6D9J|1|2|U|581
6D9J|1|2|U|582
6D9J|1|2|A|583
6D9J|1|2|A|584
6D9J|1|2|C|585
6D9J|1|2|G|586
6D9J|1|2|A|587
6D9J|1|2|G|588
6D9J|1|2|G|589
6D9J|1|2|A|590
6D9J|1|2|U|591
6D9J|1|2|C|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain ZZ

eS24

Chain ff

eS30