IL_6D9J_272

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCG*CCC

Length

7 nucleotides

Bulged bases

6D9J|1|2|C|753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_272 not in the Motif Atlas

Geometric match to IL_8C3A_120

Geometric discrepancy: 0.2757

The information below is about IL_8C3A_120

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6D9J|1|2|G|751
6D9J|1|2|G|752
6D9J|1|2|C|753
6D9J|1|2|G|754
*
6D9J|1|2|C|790
6D9J|1|2|C|791
6D9J|1|2|C|792

Current chains

Chain 2

18S rRNA

Nearby chains

Chain HH

eS6