IL_6D9J_275

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGCCGGGG*CAAGAAUG

Length

17 nucleotides

Bulged bases

6D9J|1|2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|C|927
6D9J|1|2|G|928
6D9J|1|2|G|929
6D9J|1|2|C|930
6D9J|1|2|C|931
6D9J|1|2|G|932
6D9J|1|2|G|933
6D9J|1|2|G|934
6D9J|1|2|G|935
*
6D9J|1|2|C|1007
6D9J|1|2|A|1008
6D9J|1|2|A|1009
6D9J|1|2|G|1010
6D9J|1|2|A|1011
6D9J|1|2|A|1012
6D9J|1|2|U|1013
6D9J|1|2|G|1014

Current chains

Chain 2

18S rRNA

Nearby chains

Chain CC

eS1

Chain OO

uS15

Chain bb

eS26

Chain c

eL30

Chain cc

eS27