IL_6D9J_284

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUCAGCGUGUGCCUACCC*GGUAACCCGUUGAACCC

Length

36 nucleotides

Bulged bases

6D9J|1|2|A|1580, 6D9J|1|2|C|1581, 6D9J|1|2|U|1585, 6D9J|1|2|G|1587

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|G|1541
6D9J|1|2|C|1542
6D9J|1|2|U|1543
6D9J|1|2|C|1544
6D9J|1|2|A|1545
6D9J|1|2|G|1546
6D9J|1|2|C|1547
6D9J|1|2|G|1548
6D9J|1|2|U|1549
6D9J|1|2|G|1550
6D9J|1|2|U|1551
6D9J|1|2|G|1552
6D9J|1|2|C|1553
6D9J|1|2|C|1554
6D9J|1|2|U|1555
6D9J|1|2|A|1556
6D9J|1|2|C|1557
6D9J|1|2|C|1558
6D9J|1|2|C|1559
*
6D9J|1|2|G|1576
6D9J|1|2|G|1577
6D9J|1|2|U|1578
6D9J|1|2|A|1579
6D9J|1|2|A|1580
6D9J|1|2|C|1581
6D9J|1|2|C|1582
6D9J|1|2|C|1583
6D9J|1|2|G|1584
6D9J|1|2|U|1585
6D9J|1|2|U|1586
6D9J|1|2|G|1587
6D9J|1|2|A|1588
6D9J|1|2|A|1589
6D9J|1|2|C|1590
6D9J|1|2|C|1591
6D9J|1|2|C|1592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain EE

uS3

Chain GG

uS7

Chain LL

eS10

Chain RR

uS9

Chain UU

eS19

Chain VV

uS10

Chain aa

eS25

Chain ee

eS29