IL_6D9J_286

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUGAGG*UCGAACU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|A|1731
6D9J|1|2|G|1732
6D9J|1|2|U|1733
6D9J|1|2|G|1734
6D9J|1|2|A|1735
6D9J|1|2|G|1736
6D9J|1|2|G|1737
*
6D9J|1|2|U|1797
6D9J|1|2|C|1798
6D9J|1|2|G|1799
6D9J|1|2|A|1800
6D9J|1|2|A|1801
6D9J|1|2|C|1802
6D9J|1|2|U|1803

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain HH

eS6

Chain JJ

eS8

Chain W

eL24