IL_6D9J_287
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAAAUGUGAUCUUGC*GUAGUGCUAUUUU
- Length
- 28 nucleotides
- Bulged bases
- 6D9J|1|4|A|6032, 6D9J|1|4|G|6044, 6D9J|1|4|U|6086
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|4|A|6031
6D9J|1|4|A|6032
6D9J|1|4|A|6033
6D9J|1|4|A|6034
6D9J|1|4|U|6035
6D9J|1|4|G|6036
6D9J|1|4|U|6037
6D9J|1|4|G|6038
6D9J|1|4|A|6039
6D9J|1|4|U|6040
6D9J|1|4|C|6041
6D9J|1|4|U|6042
6D9J|1|4|U|6043
6D9J|1|4|G|6044
6D9J|1|4|C|6045
*
6D9J|1|4|G|6082
6D9J|1|4|U|6083
6D9J|1|4|A|6084
6D9J|1|4|G|6085
6D9J|1|4|U|6086
6D9J|1|4|G|6087
6D9J|1|4|C|6088
6D9J|1|4|U|6089
6D9J|1|4|A|6090
6D9J|1|4|U|6091
6D9J|1|4|U|6092
6D9J|1|4|U|6093
6D9J|1|4|U|6094
Current chains
- Chain 4
- CrPV IRES
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- uL1
Coloring options: