IL_6D9J_288

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAU*AUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_288 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3545

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6D9J|1|4|G|6129
6D9J|1|4|G|6130
6D9J|1|4|A|6131
6D9J|1|4|U|6132
*
6D9J|1|4|A|6154
6D9J|1|4|U|6155
6D9J|1|4|C|6156
6D9J|1|4|C|6157

Current chains

Chain 4

CrPV IRES

Nearby chains