IL_6D9J_294

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGGGUCCG*CGGCCGC

Length

16 nucleotides

Bulged bases

6D9J|1|5|G|481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|G|479
6D9J|1|5|C|480
6D9J|1|5|G|481
6D9J|1|5|G|482
6D9J|1|5|G|483
6D9J|1|5|U|484
6D9J|1|5|C|485
6D9J|1|5|C|486
6D9J|1|5|G|487
*
6D9J|1|5|C|669
6D9J|1|5|G|670
6D9J|1|5|G|671
6D9J|1|5|C|672
6D9J|1|5|C|673
6D9J|1|5|G|674
6D9J|1|5|C|675

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain r

eL28