IL_6D9J_296

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGCG*CCCG

Length

9 nucleotides

Bulged bases

6D9J|1|5|C|498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_296 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.3395

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

6D9J|1|5|C|495
6D9J|1|5|G|496
6D9J|1|5|G|497
6D9J|1|5|C|498
6D9J|1|5|G|499
*
6D9J|1|5|C|656
6D9J|1|5|C|657
6D9J|1|5|C|658
6D9J|1|5|G|659

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4