IL_6D9J_300
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGGGAAGGCC*GGCAGCAGCAGCUCG
- Length
- 26 nucleotides
- Bulged bases
- 6D9J|1|5|G|729, 6D9J|1|5|G|730, 6D9J|1|5|G|933, 6D9J|1|5|C|934, 6D9J|1|5|A|935, 6D9J|1|5|G|935|||A, 6D9J|1|5|C|936
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|5|C|727
6D9J|1|5|U|728
6D9J|1|5|G|729
6D9J|1|5|G|730
6D9J|1|5|G|731
6D9J|1|5|A|732
6D9J|1|5|A|733
6D9J|1|5|G|734
6D9J|1|5|G|735
6D9J|1|5|C|736
6D9J|1|5|C|737
*
6D9J|1|5|G|926
6D9J|1|5|G|927
6D9J|1|5|C|928
6D9J|1|5|A|929
6D9J|1|5|G|930
6D9J|1|5|C|931
6D9J|1|5|A|932
6D9J|1|5|G|933
6D9J|1|5|C|934
6D9J|1|5|A|935
6D9J|1|5|G|935|||A
6D9J|1|5|C|936
6D9J|1|5|U|937
6D9J|1|5|C|938
6D9J|1|5|G|939
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain F
- uL30
- Chain M
- eL14
- Chain S
- eL20
Coloring options: